Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| CESC | rs68013172 | chr1:40312053 | TG/T | 3.48E-5 | 224 | 14.27 | 9.47 | 8.4 | KM Plot |
| CESC | rs6899575 | chr6:42147620 | A/G | 4.32E-5 | 224 | 4.88 | 20.93 | 13.45 | KM Plot |
| CESC | rs6967399 | chr7:104220920 | A/C | 3.96E-6 | 224 | 1.5 | 15.7 | 13.92 | KM Plot |
| CESC | rs7191714 | chr16:1864716 | C/G | 4.8E-5 | 223 | 13.8 | 15.03 | 6.02 | KM Plot |
| CESC | rs7197435 | chr16:1864847 | T/C | 4.8E-5 | 223 | 13.8 | 15.03 | 6.02 | KM Plot |
| CESC | rs73166619 | chr22:21930093 | C/T | 5.52E-5 | 224 | 15.7 | 12.83 | 7.57 | KM Plot |
| CESC | rs73166630 | chr22:21945978 | G/A | 6.02E-5 | 223 | 15.3 | 12.83 | 7.57 | KM Plot |
| CESC | rs73248660 | chr4:53466704 | G/T | 2.17E-9 | 219 | 14.9 | 7.03 | 4.8 | KM Plot |
| CESC | rs73248666 | chr4:53478438 | T/C | 2.17E-9 | 219 | 14.9 | 7.03 | 4.8 | KM Plot |
| CESC | rs73267828 | chr17:29003806 | C/A | 0 | 221 | 14.27 | 9.83 | 1.23 | KM Plot |
| CESC | rs73267829 | chr17:29003939 | G/A | 0 | 221 | 14.27 | 9.83 | 1.23 | KM Plot |
| CESC | rs73379021 | chr8:144665111 | G/A | 1.01E-6 | 213 | 10.98 | 17.07 | 4.07 | KM Plot |
| CESC | rs73485872 | chr16:1863086 | C/T | 4.33E-5 | 224 | 13.93 | 15.03 | 6.02 | KM Plot |
| CESC | rs73485882 | chr16:1863476 | A/C | 4.33E-5 | 224 | 13.93 | 15.03 | 6.02 | KM Plot |
| CESC | rs73485899 | chr16:1866578 | G/C | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |